All the per-SNP summary statistics described below are conducted after removing individuals with high missing genotype rates, as defined by the --notice option. The default value of which is 0 however, i.e. do not exclude any individuals.
To your people, heterozygous X and you can heterozygous Y genotypes try addressed once the forgotten. Getting the right designation out-of sex was therefore vital that you receive direct genotype speed rates, otherwise stop incorrectly deleting samples, etc.
plink –document studies –missing
This one brings a few files: hence outline missingness of the individual and by SNP (locus), correspondingly. For people, brand new style is: Each SNP, the fresh style try:
HINT To produce summary of missingness that is stratified by a categorical cluster variable, use the --within filename option as well as --missing. Continua a leggere